PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0331s0130.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ARF
Protein Properties Length: 593aa    MW: 65482 Da    PI: 5.412
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0331s0130.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B379.14.6e-25126227199
                             EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 
                             f k+ltpsd+++ g +++p+ +a+++        +++ +  tlt++d +g sW++++iyr++++r++lt+GW++Fv+ ++L +gD+v
  SapurV1A.0331s0130.2.p 126 FAKILTPSDANNGGGFSVPRFCADSIfpplnyqAEPPVQ--TLTVTDIHGISWDFRHIYRGTPRRHLLTTGWSKFVNNKKLIAGDSV 210
                             89*********************999****985444444..9********************************************* PP

                             EEEE-SSSEE..EEEEE-S CS
                      B3  81 vFkldgrsefelvvkvfrk 99 
                             vF+  ++ ++e++++v+r+
  SapurV1A.0331s0130.2.p 211 VFM--RNLKGEMFIGVRRA 227
                             ***..568999*****996 PP

2Auxin_resp87.23.1e-29271355183
              Auxin_resp   1 aahaastksvFevvYnPrast.seFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                             a++ a+++ +F+vvY+Pra++ s+Fvv++e ve+al v ++ GmR+kma+etedss+ ++ +Gtv+g+   d+  W++S+Wr+L+
  SapurV1A.0331s0130.2.p 271 AVEMAAKGLPFDVVYYPRAGWySDFVVRAEAVEAALGVFWTSGMRVKMAMETEDSSRMTWfQGTVSGTGLPDSGAWRGSPWRMLQ 355
                             6788999************9779************************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.6E-34117230IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.62E-30120233IPR015300DNA-binding pseudobarrel domain
CDDcd100171.56E-20125226No hitNo description
PfamPF023621.4E-22126227IPR003340B3 DNA binding domain
SMARTSM010199.5E-22126228IPR003340B3 DNA binding domain
PROSITE profilePS5086312.661126228IPR003340B3 DNA binding domain
PfamPF065073.5E-27271355IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 593 aa     Download sequence    Send to blast
MPQPTELSRV DQRIWRACAG SSVQIPTVNS RVYYFPQGHL EQSSSSTAPH PPSLSNLALS  60
KPLISCQISA VDLLADPVTD EVFIRLLLLP LNNNSCNLPL SFLEPSRREG GGVNEVDDDE  120
NKILSFAKIL TPSDANNGGG FSVPRFCADS IFPPLNYQAE PPVQTLTVTD IHGISWDFRH  180
IYRGTPRRHL LTTGWSKFVN NKKLIAGDSV VFMRNLKGEM FIGVRRAVRL NNSARWREQV  240
VGGCGETKVK VEEGFSRSGR GRLSQEAVAE AVEMAAKGLP FDVVYYPRAG WYSDFVVRAE  300
AVEAALGVFW TSGMRVKMAM ETEDSSRMTW FQGTVSGTGL PDSGAWRGSP WRMLQVTWDE  360
PEVLQNAKRV SPWQVEFVAT TSPLQAAFPP MKKLRYPNDS RFLTDGELFF PMSDLTNSTM  420
GHMNASMLNY STFPAGMQGA RQDSFSTFGL SNFISDTAPQ VFSDRAFGNN LVLKMKRMPS  480
EMNIGSLQSE NLSPESQSSA YSFDTGFVEN KGFNPKKVGI NSIQLFGKII HMDQPVENGF  540
EDVGFMDDSS KCCNETEGVD ALELSLSSSY TELLGRIDVQ CQRTSPVEAC ST*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A5e-691037651388Auxin response factor 5
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011006322.10.0PREDICTED: auxin response factor 17-like
SwissprotQ84WU60.0ARFQ_ARATH; Auxin response factor 17
TrEMBLB9H7880.0B9H788_POPTR; Auxin response factor
STRINGPOPTR_0005s16320.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.10.0auxin response factor 17